Integrative Biomedical
Data Analysis

Our ImPartial framework for SOTA cell/whole-cell segmentation across brightfield and multiplex images using only fraction (< 10%) of cell annotations was accepted for Oral presentation (< 2% of accepted paper) at MICCAI 2026, Strasbourg, France. ImPartial is integrated in NVIDIA's MONAI ecosystem and is part of our DeepLIIF platform now deployed in clinic.

Launched Tempus opensoruce IMS Consortium as a founding member with Yale and other institutions to accelerate digital pathology adoption and clinical translation of research tools. This is an important first step for companies/institutions to develop, deploy, validate, monitor, and disseminate clinical AI solutions with standardized APIS and workflows. We will be announcing the details soon for engagement with this initiative!

Our Opwise surgical AI model became the first AI model to be deployed in clinic for robotic assisted radical cystectomy.

Our DeepLIIF became the first fully open source pathology AI model to be deployed in College of American Pathologists (CAP) AI Studio along with several competing commercial vendor solutions. This will lead to fully transparent evaluation of clinical-grade AI models.

Our DeepLIIF became the first pathology AI model to be deployed in clinic for universal immunohistochemistry quantification with full integration with PathPresenter and EPIC. We support more than 40 markers across surgical pathology, haematopathology and cytology.

Dr. Nadeem was promoted to Associate Member/Attending and our lab is now affiliated with MSK Gersner Sloan Kettering Graduate School of Biomedical Sciences.

Dr. Nadeem will Chair the Oral and Spotlight Health Equity Care for All Session (Oct 7) at MICCAI 2024 (Marrakesh, Morocco). We will also give an Oral presentation of our accepted paper, "Rethinking histology slide digitization workflows for low-resource settings", at the Oral Health Equity Low-Resource Settings Session on Oct 8.

Dr. Nadeem will be giving an invited talk at the 9th Annual MidAtlantic Bioinformatics Conference, organized by Department of Biomedical and Health Informatics (DBHi) at the Children's Hospital of Philadelphia and University of Pennsylvania's Institute for Biomedical Informatics (IBI).

Dr. Nadeem will give an invited talk at the Cleveland Clinic Integrated Hospital Care Institute.

Dr. Nadeem will give an invited talk at The 3rd Annual Warren Alpert Foundation Center, Symposium 2024.

Dr. Nadeem will be leading the Human-AI interaction Working Group for the largest industry/academia opensource MONAI consortium.

Dr. Nadeem discussed the hard realities of translational research and clinical deployments in pathology, radiology, or surgery with Anirban Mukhopadhyay on AI-Ready Healthcare podcast.

Dr. Nadeem will serve on the Program Committee for the prestigious 39th Annual AAAI Conference on Artificial Intelligence 2025.

Dr. Nadeem gave an invited talk at Roche Tissue Diagnostics on "Integrated Diagnostics: Current and Future States."

Our paper on Rethinking Histology Slide Digitization Workflows for Low-Resource Settings is accepted for publication at MICCAI 2024.

Dr. Nadeem will be giving an invited plenary talk at the 20th Annual Tucson Symposium - Roche Diagnostics USA.

Dr. Nadeem will be giving an invited talk at the Artificial Intelligence, Systems and Spatial Biology in Human Disease Conference at Mayo Clinic.

Dr. Nadeem will be course faculty for the Annual 2024 Digital Pathology Course at Memorial Sloan Kettering Cancer Center.

Dr. Nadeem is serving as the Area Chair for MICCAI 2024.

Dr. Nadeem is teaching Machine Learning with Images course at Weill Cornell Graduate School of Medical Sciences.

Dr. Nadeem served as the Area Chair and Computational Pathology Oral Session Chair for MICCAI 2023.

Our paper on multi-institution Ki67 DeepLIIF validation in medullary thyroid carcinoma is now published in Histopathology'23.

Our paper on a new AI-ready restained and co-registered multiplex IHC and multiplex immunofluorescence dataset for reproducible and accurate characterization of tumor microenvironment is accepted for publication in MICCAI'23. The dataset is now published on The Cancer Imaging Archive.

Dr. Nadeem will serve on the MONAI Advisory Board.

Dr. Nadeem will serve as an Area Chair for MICCAI 2023.

Invited in-person talk at Bristol-Myers Squibb (Princeton).

Invited talk Stanford Medical Physics Grand Rounds on "Building a comprehensive multimodal/multiscale patient snapshot for improved clinical outcomes". Video recording available here.

Dr. Nadeem will serve on the MSK AI Ethics Leadership Committee.

Dr. Nadeem is the winner of the Annual MSK Departmental Research Excellence Award. Thank you to all the lab members, collaborators, and the administrative staff who supported our research.

Joseph Marino
(senior data scientist)
joins the lab.

James Mathews (senior data scientist), Rami Vanguri (senior data scientist), Gunjan Shrivastava (data scientist), and Eliram Nof (postdoc) join the lab.

Awarded $4.2M MSKCC DigITs funding for research and development of "institutional multiplex image analysis pipelines for biomarker quantification".

Invited MSK Hospital Research Forum talk on "Spatial Profiling for Quantitative and Predictive Biomarkers".